PoplarV1, Main, Exploration, bibRecord, 002068

Rhizobium populi sp. nov., an endophytic bacterium isolated from Populus euphratica.

Identifieur interne : 002068 ( Main/Exploration ); précédent : 002067; suivant : 002069

Rhizobium populi sp. nov., an endophytic bacterium isolated from Populus euphratica.

Auteurs : Manziram Rozahon [République populaire de Chine] ; Nurimangul Ismayil [République populaire de Chine] ; Buayshem Hamood [République populaire de Chine] ; Raziya Erkin [République populaire de Chine] ; Mehfuzem Abdurahman [République populaire de Chine] ; Hormathan Mamtimin [République populaire de Chine] ; Muhtar Abdukerim [République populaire de Chine] ; Rup Lal [Inde] ; Erkin Rahman [République populaire de Chine]

Source :

International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2014.

RBID : pubmed:24972613

Descripteurs français

KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Données de séquences moléculaires (MeSH), Gènes bactériens (MeSH), Hybridation d'acides nucléiques (MeSH), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Rhizobium (classification), Rhizobium (génétique), Rhizobium (isolement et purification), Techniques de typage bactérien (MeSH).
MESH :
- composition chimique : Acides gras, Phospholipides, Rhizobium.
- génétique : ADN bactérien, ARN ribosomique 16S, Rhizobium.
- isolement et purification : Rhizobium.
- microbiologie : Populus.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Données de séquences moléculaires, Gènes bactériens, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien.

English descriptors

KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Genes, Bacterial (MeSH), Molecular Sequence Data (MeSH), Nucleic Acid Hybridization (MeSH), Phospholipids (chemistry), Phylogeny (MeSH), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Rhizobium (classification), Rhizobium (genetics), Rhizobium (isolation & purification), Sequence Analysis, DNA (MeSH).
MESH :
- chemical , chemistry : Fatty Acids, Phospholipids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Rhizobium.
- genetics : Rhizobium.
- isolation & purification : Rhizobium.
- microbiology : Populus.
- Bacterial Typing Techniques, Base Composition, China, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA.

Abstract

An endophytic bacterium, designated K-38(T), was isolated from the storage liquid in the stems of Populus euphratica trees at the ancient Ugan River in Xinjiang, PR China. Strain K-38(T) was found to be rod-shaped, Gram-stain-negative, aerobic, non-motile and non-spore-forming. Strain K-38(T) grew at temperatures of 25-37 °C (optimum, 28 °C), at pH 6.0-9.0 (optimum, pH 7.5) and in the presence of 0-3 % (w/v) NaCl with 1 % as the optimum concentration for growth. According to phylogenetic analysis based on 16S rRNA gene sequences, strain K-38(T) was assigned to the genus Rhizobium with highest 16S rRNA gene sequence similarity of 97.2 % to Rhizobium rosettiformans W3(T), followed by Rhizobium nepotum 39/7(T) (96.5 %) and Rhizobium borbori DN316(T) (96.2 %). Phylogenetic analysis of strain K-38(T) based on the protein coding genes recA, atpD and nifH confirmed (similarities were less than 90 %) it to be a representative of a distinctly delineated species of the genus Rhizobium. The DNA G+C content was determined to be 63.5 mol%. DNA-DNA relatedness between K-38(T) and R. rosettiformans W3(T) was 48.4 %, indicating genetic separation of strain K-38(T) from the latter strain. The major components of the cellular fatty acids in strain K-38(T) were revealed to be summed feature 8 (comprising C18 : 1ω7c and/or C18 : 1ω6c; 57.2 %), C16 : 0 (13.6 %) and summed feature 2 (comprising C12 : 0 aldehyde, C14 : 0 3-OH/iso-C16 : 1 I and/or unknown ECL 10.928; 11.0 %). Polar lipids of strain K-38(T) include phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified aminophospholipids and two unidentified phospholipids. Q-10 was the major quinone in strain K-38(T). Based on phenotypic, chemotaxonomic and phylogenetic properties, strain K-38(T) represents a novel species of the genus Rhizobium, for which the name Rhizobium populi sp. nov. is proposed. The type strain is K-38(T) ( = CCTCC AB 2013068(T) = NRRL B-59990(T) = JCM 19159(T)).

DOI: 10.1099/ijs.0.061416-0
PubMed: 24972613

Affiliations:

Inde, République populaire de Chine

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Genes, Bacterial (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
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<term>Rhizobium (genetics)</term>
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<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes bactériens (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Rhizobium (classification)</term>
<term>Rhizobium (génétique)</term>
<term>Rhizobium (isolement et purification)</term>
<term>Techniques de typage bactérien (MeSH)</term>
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<term>Phospholipids</term>
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<term>RNA, Ribosomal, 16S</term>
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<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Acides gras</term>
<term>Phospholipides</term>
<term>Rhizobium</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Rhizobium</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Rhizobium</term>
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<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Rhizobium</term>
</keywords>
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<term>Base Composition</term>
<term>China</term>
<term>Genes, Bacterial</term>
<term>Molecular Sequence Data</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Données de séquences moléculaires</term>
<term>Gènes bactériens</term>
<term>Hybridation d'acides nucléiques</term>
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<front><div type="abstract" xml:lang="en">An endophytic bacterium, designated K-38(T), was isolated from the storage liquid in the stems of Populus euphratica trees at the ancient Ugan River in Xinjiang, PR China. Strain K-38(T) was found to be rod-shaped, Gram-stain-negative, aerobic, non-motile and non-spore-forming. Strain K-38(T) grew at temperatures of 25-37 °C (optimum, 28 °C), at pH 6.0-9.0 (optimum, pH 7.5) and in the presence of 0-3 % (w/v) NaCl with 1 % as the optimum concentration for growth. According to phylogenetic analysis based on 16S rRNA gene sequences, strain K-38(T) was assigned to the genus Rhizobium with highest 16S rRNA gene sequence similarity of 97.2 % to Rhizobium rosettiformans W3(T), followed by Rhizobium nepotum 39/7(T) (96.5 %) and Rhizobium borbori DN316(T) (96.2 %). Phylogenetic analysis of strain K-38(T) based on the protein coding genes recA, atpD and nifH confirmed (similarities were less than 90 %) it to be a representative of a distinctly delineated species of the genus Rhizobium. The DNA G+C content was determined to be 63.5 mol%. DNA-DNA relatedness between K-38(T) and R. rosettiformans W3(T) was 48.4 %, indicating genetic separation of strain K-38(T) from the latter strain. The major components of the cellular fatty acids in strain K-38(T) were revealed to be summed feature 8 (comprising C18 : 1ω7c and/or C18 : 1ω6c; 57.2 %), C16 : 0 (13.6 %) and summed feature 2 (comprising C12 : 0 aldehyde, C14 : 0 3-OH/iso-C16 : 1 I and/or unknown ECL 10.928; 11.0 %). Polar lipids of strain K-38(T) include phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified aminophospholipids and two unidentified phospholipids. Q-10 was the major quinone in strain K-38(T). Based on phenotypic, chemotaxonomic and phylogenetic properties, strain K-38(T) represents a novel species of the genus Rhizobium, for which the name Rhizobium populi sp. nov. is proposed. The type strain is K-38(T) ( = CCTCC AB 2013068(T) = NRRL B-59990(T) = JCM 19159(T)). </div>
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<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.061416-0</ELocationID>
<Abstract><AbstractText>An endophytic bacterium, designated K-38(T), was isolated from the storage liquid in the stems of Populus euphratica trees at the ancient Ugan River in Xinjiang, PR China. Strain K-38(T) was found to be rod-shaped, Gram-stain-negative, aerobic, non-motile and non-spore-forming. Strain K-38(T) grew at temperatures of 25-37 °C (optimum, 28 °C), at pH 6.0-9.0 (optimum, pH 7.5) and in the presence of 0-3 % (w/v) NaCl with 1 % as the optimum concentration for growth. According to phylogenetic analysis based on 16S rRNA gene sequences, strain K-38(T) was assigned to the genus Rhizobium with highest 16S rRNA gene sequence similarity of 97.2 % to Rhizobium rosettiformans W3(T), followed by Rhizobium nepotum 39/7(T) (96.5 %) and Rhizobium borbori DN316(T) (96.2 %). Phylogenetic analysis of strain K-38(T) based on the protein coding genes recA, atpD and nifH confirmed (similarities were less than 90 %) it to be a representative of a distinctly delineated species of the genus Rhizobium. The DNA G+C content was determined to be 63.5 mol%. DNA-DNA relatedness between K-38(T) and R. rosettiformans W3(T) was 48.4 %, indicating genetic separation of strain K-38(T) from the latter strain. The major components of the cellular fatty acids in strain K-38(T) were revealed to be summed feature 8 (comprising C18 : 1ω7c and/or C18 : 1ω6c; 57.2 %), C16 : 0 (13.6 %) and summed feature 2 (comprising C12 : 0 aldehyde, C14 : 0 3-OH/iso-C16 : 1 I and/or unknown ECL 10.928; 11.0 %). Polar lipids of strain K-38(T) include phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, two unidentified aminophospholipids and two unidentified phospholipids. Q-10 was the major quinone in strain K-38(T). Based on phenotypic, chemotaxonomic and phylogenetic properties, strain K-38(T) represents a novel species of the genus Rhizobium, for which the name Rhizobium populi sp. nov. is proposed. The type strain is K-38(T) ( = CCTCC AB 2013068(T) = NRRL B-59990(T) = JCM 19159(T)). </AbstractText>
<CopyrightInformation>© 2014 IUMS.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rozahon</LastName>
<ForeName>Manziram</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ismayil</LastName>
<ForeName>Nurimangul</ForeName>
<Initials>N</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hamood</LastName>
<ForeName>Buayshem</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Erkin</LastName>
<ForeName>Raziya</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Abdurahman</LastName>
<ForeName>Mehfuzem</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Mamtimin</LastName>
<ForeName>Hormathan</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Abdukerim</LastName>
<ForeName>Muhtar</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lal</LastName>
<ForeName>Rup</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi 110007, India.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Rahman</LastName>
<ForeName>Erkin</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>College of Life Science and Technology of Xinjiang University, Urumchi, Xinjiang 830046, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>KC609734</AccessionNumber>
<AccessionNumber>KF898922</AccessionNumber>
<AccessionNumber>KF939630</AccessionNumber>
<AccessionNumber>KF951420</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2014</Year>
<Month>06</Month>
<Day>27</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012231" MajorTopicYN="N">Rhizobium</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2014</Year>
<Month>6</Month>
<Day>29</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2014</Year>
<Month>6</Month>
<Day>29</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2014</Year>
<Month>10</Month>
<Day>31</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">24972613</ArticleId>
<ArticleId IdType="doi">10.1099/ijs.0.061416-0</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Inde</li>
<li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Rozahon, Manziram" sort="Rozahon, Manziram" uniqKey="Rozahon M" first="Manziram" last="Rozahon">Manziram Rozahon</name>
</noRegion>
<name sortKey="Abdukerim, Muhtar" sort="Abdukerim, Muhtar" uniqKey="Abdukerim M" first="Muhtar" last="Abdukerim">Muhtar Abdukerim</name>
<name sortKey="Abdurahman, Mehfuzem" sort="Abdurahman, Mehfuzem" uniqKey="Abdurahman M" first="Mehfuzem" last="Abdurahman">Mehfuzem Abdurahman</name>
<name sortKey="Erkin, Raziya" sort="Erkin, Raziya" uniqKey="Erkin R" first="Raziya" last="Erkin">Raziya Erkin</name>
<name sortKey="Hamood, Buayshem" sort="Hamood, Buayshem" uniqKey="Hamood B" first="Buayshem" last="Hamood">Buayshem Hamood</name>
<name sortKey="Ismayil, Nurimangul" sort="Ismayil, Nurimangul" uniqKey="Ismayil N" first="Nurimangul" last="Ismayil">Nurimangul Ismayil</name>
<name sortKey="Mamtimin, Hormathan" sort="Mamtimin, Hormathan" uniqKey="Mamtimin H" first="Hormathan" last="Mamtimin">Hormathan Mamtimin</name>
<name sortKey="Rahman, Erkin" sort="Rahman, Erkin" uniqKey="Rahman E" first="Erkin" last="Rahman">Erkin Rahman</name>
</country>
<country name="Inde"><noRegion><name sortKey="Lal, Rup" sort="Lal, Rup" uniqKey="Lal R" first="Rup" last="Lal">Rup Lal</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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Rhizobium populi sp. nov., an endophytic bacterium isolated from Populus euphratica.

Rhizobium populi sp. nov., an endophytic bacterium isolated from Populus euphratica.

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